first commit

.gitignore

+.idea
+piano_transcription/output*
+*.pyc
+*.json
+*.pkl
+*.eps
+*.pdf
+*.pgf

piano_transcription/__init__.py

+import os
+
+PROJECT_PATH = os.path.abspath(os.path.dirname(__file__))
+OUTPUT_PATH = os.path.join(PROJECT_PATH, 'output')
+
+
+if not os.path.exists(OUTPUT_PATH):
+    os.makedirs(OUTPUT_PATH)
\ No newline at end of file

piano_transcription/data/__init__.py

+import numpy as np
+
+
+# TODO remove this and load and use real data!
+FEAT_SIZE = 300
+OUT_SIZE = 80
+FULL_SEQ_LEN = 2000
+NUM_SAMPLES_TRAIN = 100
+NUM_SAMPLES_VALID = 10
+
+
+def generate_random_sample():
+    feat = np.random.rand(FULL_SEQ_LEN, FEAT_SIZE)
+    targ = np.random.rand(FULL_SEQ_LEN, OUT_SIZE)
+
+    return feat, targ
+
+
+def load_data(split_nr):
+    feat_train = []
+    targ_train = []
+    feat_valid = []
+    targ_valid = []
+
+    for sample_idx in range(NUM_SAMPLES_TRAIN):
+        feat, targ = generate_random_sample()
+        feat_train.append(feat)
+        targ_train.append(targ)
+
+    for sample_idx in range(NUM_SAMPLES_VALID):
+        feat, targ = generate_random_sample()
+        feat_valid.append(feat)
+        targ_valid.append(targ)
+
+    return feat_train, targ_train, feat_valid, targ_valid, FULL_SEQ_LEN, FEAT_SIZE, OUT_SIZE

piano_transcription/data/annotations.py

+import numpy as np
+import logging
+
+logging.basicConfig(level=logging.INFO)
+logger = logging.getLogger(__name__)
+
+
+def read_txt_annotations(txt_file, offset=0):
+    with open(txt_file) as f:
+        content = f.readlines()
+
+    if len(content) == 0:
+        print('empty file: ' + str(txt_file))
+        return np.asarray([])
+
+    if not content[0].strip()[0].isdigit():
+        first_line = content.pop(0)
+        # print("dropping first line of "+txt_file+" because it was: "+first_line)
+
+    if content is None or len(content) <= 0:
+        print('nothing left for file: '+str(txt_file))
+        return np.asarray([])
+
+    num_cols = len(content[0].strip().split())
+    assert num_cols >= 2
+
+    times = np.ones((len(content), num_cols)) * -1
+    for i_line, line in enumerate(content):
+        parts = line.split()
+        time = float(parts[0])
+        times[i_line][0] = time
+
+        if len(parts) < 2:
+            logger.warning("No label at line: " + str(i_line) + " in file: " + txt_file)
+            continue
+
+        temp_type = parts[1].strip()
+        label = float(temp_type)+offset
+        times[i_line][1] = label
+
+        if len(parts) < 3:
+            logger.debug("No velocity at line: " + str(i_line) + " in file: " + txt_file)
+        else:
+            if num_cols < 3:
+                logger.warning("more columns detected than in first row for row nr %d: %s"%(i_line, line))
+            times[i_line][2] = float(parts[2].strip())
+
+    return times
+
+
+def clean_annotation(content):
+    # if events remain, look for repetitions and remove them:
+    if len(content) > 0:
+        content = np.asarray(content)
+        times = content[np.argsort(content[:, 1])]
+        times = times[times[:, 0].argsort(kind='mergesort')]  # we dont care about performance so much, but need a stable sort
+        idx_in = 1
+        idx_out = 1
+        content[0, :] = times[0, :]
+        while idx_in < times.shape[0]:
+            content[idx_out, :] = times[idx_in, :]
+            if all(np.equal(times[idx_in - 1, :2], (times[idx_in, :2]))):   # time and inst equal -> remove (we dont care about different velocities)
+                # print('### cur file: ' + cur_file + ' time: ' + str(times[idx_in]) + ' -- ' + str(times[idx_in - 1]))
+                idx_in += 1
+            else:
+                idx_in += 1
+                idx_out += 1
+
+        content = content[:idx_out, :]
+    return content
+
+
+def posprocess_annotations(times, inst_map=None, offset=0, num_classes=100):
+    content = []
+    if len(times) <= 0:
+        return content
+    times = times[times[:, 0].argsort(kind='mergesort')]
+    num_cols = times.shape[1]
+    assert num_cols > 1
+    if num_cols < 3:
+        times = np.hstack((times, np.ones((times.shape[0], 3-num_cols))*-1))
+    assert num_cols == 3
+    # last_entry = [-1 for _ in range(num_cols)]
+    for (time, label, velocity) in times:
+        if inst_map is not None:
+            if label in inst_map:
+                label = inst_map[label]
+            else:
+                logger.debug("No label mapping found for: %s" % label)
+                label = -1
+        new_label = label - offset
+        if 0 <= new_label < num_classes:
+            # cur_entry = [time, new_label, velocity]
+            # if not all([cur_entry[i] == last_entry[i] for i in range(num_cols)]):  # skip equal entries caused by mapping
+            #     content.append(cur_entry)
+            content.append([time, new_label, velocity])
+            # last_entry = cur_entry
+        else:
+            logger.debug("No valid label: %s, ignoring entry" % new_label)
+
+    return clean_annotation(content)
+
+
+def compute_target_array_from_times(times, fps, num_frames, num_targets, offset=0, soft_targets=False, statistics=None):
+
+    if len(times) > 0 and np.max(times, 0)[0] * fps > num_frames:
+        logging.warning("Maximum time is larger than number of samples - cutting times.")
+    if len(times) > 0 and np.max(times, 0)[1] >= num_targets:
+        logging.warning("Maximum label index is larger than num_targets - cutting labels.")
+
+    targets = np.zeros((num_frames, num_targets))
+
+    times_out_cnt = 0
+
+    for entry_nr, time_entry in enumerate(times):
+        time = time_entry[0] + offset
+        time_idx = int(time*fps)
+        inst_idx = int(time_entry[1])
+        if 0 <= inst_idx < num_targets:
+            if time_idx < num_frames:
+                targets[time_idx, inst_idx] = 1
+                if soft_targets:
+                    if time_idx > 0:
+                        targets[time_idx-1, inst_idx] = 0.5
+                    if time_idx < num_frames-1:
+                        targets[time_idx+1, inst_idx] = 0.5
+            else:
+                # logging.warning('Time idx (%f / %d) out of bounds (%d) at entry number: %d ' % (time, time_idx, num_frames, entry_nr))
+                times_out_cnt += 1
+        else:
+            logging.warning('Label idx (%d) out of range at entry number: %d' % (inst_idx, entry_nr))
+            if statistics is not None:
+                statistics.total_pruned += 1
+
+    return targets, times_out_cnt
+
+
+def write_txt_annotation(filename, data):
+    with open(filename, 'w') as f:
+        for entry in data:
+            f.write("%3.5f \t %d\n" % (entry[0], entry[1]))
+
+
+def write_3c_txt_annotation(filename, data):
+    with open(filename, 'w') as f:
+        for entry in data:
+            f.write("%3.5f \t %d \t %f \n" % (entry[0], entry[1], entry[2]))
\ No newline at end of file

piano_transcription/data/data_pools.py

+import numpy as np
+
+
+class BatchIterator(object):
+    """
+    Prototype for batch iterator
+    """
+
+    def __init__(self, batch_size, re_iterate=1, prepare=None, k_samples=None, shuffle=True):
+        self.batch_size = batch_size
+
+        if prepare is None:
+            def prepare(*data):
+                return data
+        self.prepare = prepare
+
+        self.re_iterate = re_iterate
+        self.k_samples = k_samples
+        self.shuffle = shuffle
+        self.epoch_counter = 0
+        self.n_epochs = None
+
+    def __call__(self, data_pool):
+        self.data_pool = data_pool
+        if self.k_samples is None or self.k_samples > self.data_pool.shape[0]:
+            self.k_samples = self.data_pool.shape[0]
+        self.n_batches = self.re_iterate * (self.k_samples // self.batch_size)
+        self.n_epochs = self.data_pool.shape[0] // self.k_samples
+
+        if self.shuffle:
+            self.data_pool.shuffle()
+
+        return self
+
+    def __iter__(self):
+
+        # compute current epoch index
+        idx_epoch = np.mod(self.epoch_counter, self.n_epochs)
+
+        # reiterate entire data-set
+        for _ in xrange(self.re_iterate):
+
+            # use only k samples per epoch
+            for i_b in xrange((self.k_samples + self.batch_size - 1) / self.batch_size):
+
+                # slice batch data
+                start = i_b * self.batch_size + idx_epoch * self.k_samples
+                stop = (i_b + 1) * self.batch_size + idx_epoch * self.k_samples
+                stop = np.min([stop, self.data_pool.shape[0]])
+                sl = slice(start, stop)
+                xb = self.data_pool[sl]
+
+                # get missing samples
+                n_sampels = xb[0].shape[0]
+                if n_sampels < self.batch_size:
+                    n_missing = self.batch_size - n_sampels
+
+                    x_con = self.data_pool[0:n_missing]
+                    for i_input in xrange(len(xb)):
+                        xb[i_input] = np.concatenate((xb[i_input], x_con[i_input]))
+
+                yield self.transform(xb)
+
+            # increase epoch counter
+            self.epoch_counter += 1
+
+        # shuffle train data after full set iteration
+        if self.shuffle and (idx_epoch + 1) == self.n_epochs:
+            self.data_pool.shuffle()
+
+    def transform(self, data):
+        return self.prepare(*data)
+
+
+class UniversalRegressionDataPool(object):
+    """ Regression data pool for RNNs, ConvNets and Convolutional RNNs """
+
+    def __init__(self, sequences, target_sequences, sub_sequence_length=1, data_context=1, step_size=1,
+                 central_target=True, do_shuffle=True):
+        """ Constructor
+
+        Parameters
+        ----------
+
+        sequences : list
+            List of data sequences (input to your network)
+
+        target_sequences : list
+            List of target sequences (target of your network prediction). Must be in line with sequences.
+
+        sub_sequence_length : int
+            Number of time steps for each training example
+
+        data_context : int
+            Temporal context for each time step. This is required for convolution and convolution RNNs.
+            Has to be an odd number 1, 3, 5, ...
+
+        step_size : int
+            Step size for producing the sub sequences
+
+        central_target : bool
+            If true only the central target is returned for prediction. Set this to true for conv-Nets and conv-RNNs.
+
+        do_shuffle : bool
+            If true data gets shuffled on initialization
+        """
+
+        self.sequences = sequences
+        self.target_sequences = target_sequences
+        self.sub_seqence_length = sub_sequence_length
+        self.data_context = data_context
+        self.step_size = step_size
+        self.central_target = central_target
+
+        self.half_context = (self.data_context - 1) // 2
+
+        self.do_shuffle = do_shuffle
+
+        self.n_sequences = len(self.sequences)
+
+        self.train_items = None
+        self.shape = None
+
+        self.prepare_train_items()
+
+        if self.do_shuffle:
+            self.shuffle()
+
+    def shuffle(self):
+        rand_idx = np.random.permutation(self.shape[0])
+        self.train_items = self.train_items[rand_idx]
+
+    def prepare_train_items(self):
+
+        seq_lengths = [sequence.shape[0] for sequence in self.sequences]
+        n_items = sum([int(np.ceil(max(0, seq_len - self.sub_seqence_length - self.data_context+1)/float(self.step_size))) for seq_len in seq_lengths])
+
+        self.train_items = np.zeros((n_items, 2), dtype=np.int)
+        out_idx = 0
+
+        for i_seq in xrange(self.n_sequences):
+            sequence = self.sequences[i_seq]
+            target = self.target_sequences[i_seq]
+            assert len(sequence) == len(target)
+
+            start_idx = self.half_context
+            stop_idx = sequence.shape[0] - self.sub_seqence_length - self.half_context
+
+            for i_step in xrange(start_idx, stop_idx, self.step_size):
+                self.train_items[out_idx, :] = np.asarray(([i_seq, i_step]), dtype=np.int).reshape((1, 2))
+                out_idx += 1
+
+        self.shape = [self.train_items.shape[0]]
+        assert n_items == self.shape[0]
+
+    def __getitem__(self, key):
+
+        # get batch
+        if key.__class__ != slice:
+            key = slice(key, key + 1)
+
+        # fix out of bounds
+        key = slice(key.start, np.min([self.shape[0], key.stop]))
+
+        # prepare list of files
+        X = []
+        Y = []
+        for item_id in range(key.start, key.stop):
+            seq_id, step_idx = self.train_items[item_id]
+
+            # get sequences
+            seq = self.sequences[seq_id]
+            targ = self.target_sequences[seq_id]
+
+            seq_stack = []
+            targ_stack = []
+            for i_sub_seq in xrange(self.sub_seqence_length):
+
+                # define time steps
+                t0 = step_idx + i_sub_seq - self.half_context
+                t1 = t0 + self.data_context
+
+                # get sequence window
+                seq_stack.append(seq[t0:t1])
+
+                if self.central_target:
+                    center_idx = t0 + self.half_context
+                    targ_stack.append(targ[center_idx:center_idx+1])
+                else:
+                    targ_stack.append(targ[t0:t1])
+
+            seq_stack = np.asarray(seq_stack)
+            targ_stack = np.asarray(targ_stack)
+
+            X.append(seq_stack)
+            Y.append(targ_stack)
+
+        X = np.asarray(X, dtype=np.float32)
+        Y = np.asarray(Y, dtype=np.float32)
+
+        return [X, Y]
+
+
+if __name__ == '__main__':
+    """ main """
+
+    # create dummy data
+    sequences = []
+    target_sequences = []
+    for i in xrange(10):
+        seq_len = np.random.randint(low=200, high=500)
+        sequences.append(np.random.randn(seq_len, 23))
+        target_sequences.append(np.random.randn(seq_len, 3))
+
+    data_pool = UniversalRegressionDataPool(sequences, target_sequences, sub_sequence_length=15, data_context=3,
+                                            step_size=1, central_target=True)
+
+    x, y = data_pool[0:10]
+    print x.shape, y.shape
+
+    for i in xrange(data_pool.shape[0]):
+        x, y = data_pool[i:i+1]

piano_transcription/data/features.py

+from madmom.audio.spectrogram import LogarithmicFilteredSpectrogram, SpectrogramDifference, LogarithmicFilterbank
+import numpy as np
+
+
+def extract_features(audiofile):
+
+    num_channels = 1
+    sample_rate = 44100
+    frame_sizes = [1024, 2048, 4096]
+    fps = 100
+    num_bands = 12
+    fmin = 30
+    fmax = 17000
+    norm_filters = True
+    start_silence = 0
+    diff = True
+    diff_ratio = 0.5
+    positive_diffs = True
+
+    spectrograms = []
+    for frame_size in frame_sizes:
+        spectrogram = LogarithmicFilteredSpectrogram(
+            audiofile, num_channels=num_channels, sample_rate=sample_rate,
+            filterbank=LogarithmicFilterbank, frame_size=frame_size, fps=fps,
+            num_bands=num_bands, fmin=fmin, fmax=fmax,
+            norm_filters=norm_filters, start_silence=start_silence)
+
+        if diff:
+            spectrogram_diff = SpectrogramDifference(
+                spectrogram, diff_ratio=diff_ratio, positive_diffs=positive_diffs,
+                stack_diffs=np.hstack)
+            spectrogram = np.hstack((spectrogram, spectrogram_diff))
+
+        spectrograms.append(spectrogram)
+
+    return np.hstack(spectrograms)
\ No newline at end of file

piano_transcription/layers/gradient.py

+
+import theano
+
+import lasagne
+from lasagne.layers.base import Layer
+
+
+__all__ = [
+    "GradientClipLayer",
+]
+
+class GradientClipLayer(Layer):
+    """
+    Apply gradient clipping to output layer
+    """
+    def __init__(self, incoming, grad_clipping, nonlinearity=lasagne.nonlinearities.identity, **kwargs):
+        super(GradientClipLayer, self).__init__(incoming, **kwargs)
+
+        self.grad_clipping = grad_clipping
+        self.nonlinearity = nonlinearity
+
+    def get_output_for(self, input, **kwargs):
+        clipped = theano.gradient.grad_clip(input, -self.grad_clipping, self.grad_clipping)
+        return self.nonlinearity(clipped)

piano_transcription/models/cnn_1.py

+#!/usr/bin/env python
+import numpy as np
+
+import theano
+
+import lasagne
+from lasagne.layers.dnn import Conv2DDNNLayer as Conv2DLayer
+from lasagne.layers.dnn import batch_norm_dnn as batch_norm
+from lasagne.layers.dnn import MaxPool2DDNNLayer as MaxPool2DLayer
+from lasagne.layers import DropoutLayer, FlattenLayer, DenseLayer
+
+from piano_transcription.data.data_pools import BatchIterator
+
+INI_LEARNING_RATE = np.float32(0.0005)
+
+BATCH_SIZE = 100
+MAX_EPOCHS = 1000
+PATIENCE = 4
+L2 = 0.0004
+
+SPEC_BINS = 168
+OUT_LEN = 88
+
+SPEC_CONTEXT = 25
+STEP_SIZE = 1
+SEQ_LENGTH = 1
+CENTRAL_TARGET = True
+
+init_conv = lasagne.init.HeNormal
+
+MAX_PRED_SIZE = 100
+USE_BATCHED_PREDICT = True
+
+dense_layers = 2
+dense_units = 256
+
+
+def get_valid_batch_iterator():
+    def batch_iterator(batch_size, k_samples, shuffle):
+        return BatchIterator(batch_size=batch_size, prepare=prepare, k_samples=k_samples, shuffle=shuffle)
+    return batch_iterator
+
+
+def get_train_batch_iterator():
+    def batch_iterator(batch_size, k_samples, shuffle):
+        return BatchIterator(batch_size=batch_size, prepare=prepare_train, k_samples=k_samples, shuffle=shuffle)
+    return batch_iterator
+
+
+def predict(net, X, max_seq_len, out_len):
+    seq_len, feat_len = X.shape
+
+    pad_width = (SPEC_CONTEXT - 1) / 2
+    x_b_p = np.pad(X, ((pad_width, pad_width), (0, 0)), 'constant')
+
+    step_size = 1
+    indices = np.arange(pad_width, x_b_p.shape[0] - pad_width, step_size).astype(np.int)
+    n_seq_pred = len(indices)
+    shape = [n_seq_pred, 1, SPEC_CONTEXT, feat_len]
+    X_pred = np.zeros(shape, dtype=theano.config.floatX)
+    for o_idx, x_idx in enumerate(indices):
+        X_pred[o_idx, 0, :, :] = x_b_p[x_idx - pad_width:x_idx + pad_width + 1, :]
+
+    if USE_BATCHED_PREDICT:
+        p_b = np.zeros((seq_len, out_len))
+        n_batches = int(np.ceil(X_pred.shape[0] / float(MAX_PRED_SIZE)))
+        for batch in xrange(n_batches):
+            i0 = batch * MAX_PRED_SIZE
+            i1 = i0 + MAX_PRED_SIZE
+            i1o = min(i1, seq_len)
+            p_b[i0:i1o] = net.predict_proba(X_pred[i0:i1])[0:(i1o-i0)]
+    else:
+        p_b = net.predict_proba(X_pred)[:seq_len]
+
+    return p_b
+
+
+def prepare(x, y):
+    y = np.squeeze(y)
+    return x, y
+
+
+def prepare_train(x, y):
+    x, y = prepare(x, y)
+    return x, y
+
+
+def build_eval_model(max_seq_len, feat_len, out_len):
+    if USE_BATCHED_PREDICT:
+        return build_model(batch_size=MAX_PRED_SIZE, seq_length=1, feat_len=feat_len, out_len=out_len)
+    else:
+        return build_model(batch_size=max_seq_len, seq_length=1, feat_len=feat_len, out_len=out_len)
+
+
+def build_model(batch_size=BATCH_SIZE, seq_length=None, feat_len=SPEC_BINS, out_len=OUT_LEN):
+    """ Compile net architecture """
+    nonlin = lasagne.nonlinearities.rectify
+
+    # --- input layers ---
+    l_in = lasagne.layers.InputLayer(shape=(batch_size, 1, SPEC_CONTEXT, feat_len))
+
+    # --- conv layers ---